PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010112909.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 199aa    MW: 21909 Da    PI: 8.5071
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010112909.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00155173123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  XP_010112909.1 51 FTCKTCNREFPSFQALGGHRASH 73
                    89**********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.24E-849120No hitNo description
PfamPF139125.3E-125075IPR007087Zinc finger, C2H2
PROSITE profilePS501578.9545173IPR007087Zinc finger, C2H2
SMARTSM003550.165173IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
PfamPF139125.1E-1097123IPR007087Zinc finger, C2H2
SMARTSM003550.598120IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.28698125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MKRGRDLDLD TANCLMLLSK VGDTKANVND KVDDNHFVVI KNETISPGRV FTCKTCNREF  60
PSFQALGGHR ASHKKLPKLF SADEALSPAA SPPKPKTHEC SICGLEFAIG QALGGHMRRH  120
RQQVADHHDQ PAVARDRQLS HDHDDDDYKA AAQLVPVLKK SSSSKRICLD LDLDLRLGPP  180
GSHYNDLKLR LMGPTLAGC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112909.11e-145Zinc finger protein ZAT8
TrEMBLW9SCA21e-145W9SCA2_9R
STRINGPOPTR_0009s03280.12e-46(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.13e-28C2H2 family protein